Fiji Lab Walkthrough

Information courtesy of Helen Wilson, Michael Nelson, Edward Evans, Ellen Dobson, Curtis Reuden, as well as well as many others involved in ImageJ/FIJI development and production of educational materials, walkthroughs, and demonstrations.

• Installing ImageJ/FIJI
• Common Keyboard Shortcuts
• Getting Started, Opening an Image
• Basic Segmentation
• Basic Registration
• Scripting
• Deconvolution
• Background Subtraction – Gaussian Filters
• TrackMate – Example from documentation
• StarDist – Basic Example
• Labkit Segmentation
• Deep Learning Classification with Cellpose
• Other Resources