Fiji Lab Walkthrough#
Information courtesy of Helen Wilson, Michael Nelson, Edward Evans, Ellen Dobson, Curtis Reuden, as well as well as many others involved in ImageJ/FIJI development and production of educational materials, walkthroughs, and demonstrations.
- Installing ImageJ/FIJI
- Common Keyboard Shortcuts
- Getting Started, Opening an Image
- Basic Segmentation
- Basic Registration
- Scripting
- Deconvolution
- Background Subtraction – Gaussian Filters
- TrackMate – Example from documentation
- StarDist – Basic Example
- Labkit Segmentation
- Deep Learning Classification with Cellpose
- Other Resources